Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 | H9N25_08305 | Q56307 | Positive | 2039384 - 2042158 | 105383.0 |
| doxx family membrane protein | H9N25_08310 | T2KNB2 | Positive | 2042287 - 2045006 | 101149.0 |
| duf3826 domain-containing protein | H9N25_08315 | Not Available | Positive | 2045143 - 2045802 | 24773.0 |
| exo-alpha-sialidase | H9N25_08320 | Not Available | Positive | 2045895 - 2047031 | 41791.1 |
| acetylxylan esterase | H9N25_08325 | Not Available | Positive | 2047186 - 2048571 | 52368.9 |
| sugar phosphate isomerase/epimerase | H9N25_08330 | Not Available | Positive | 2048577 - 2049506 | 34674.3 |
| right-handed parallel beta-helix repeat-containing protein | H9N25_08335 | Q556R9 | Positive | 2049518 - 2052175 | 100393.0 |
| gfo/idh/moca family oxidoreductase | H9N25_08340 | P46853 | Positive | 2052242 - 2053327 | 41134.1 |
| sodium/solute symporter | H9N25_08345 | A8WHP3 | Positive | 2053488 - 2055077 | 58529.3 |
| alpha-rhamnosidase | H9N25_08350 | T2KM26 | Positive | 2055196 - 2057361 | 82631.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

