Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypeptidase-like regulatory domain-containing protein | H9N25_08255 | T2KM18 | Positive | 2021238 - 2022668 | 51256.0 |
| susc/raga family tonb-linked outer membrane protein | H9N25_08260 | T2KPJ3 | Positive | 2022599 - 2024503 | 69150.9 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_08265 | T2KN63 | Positive | 2024515 - 2026338 | 66421.2 |
| polysaccharide lyase | H9N25_08270 | Q4WL88 | Positive | 2026732 - 2028387 | 60483.7 |
| polysaccharide lyase | H9N25_08275 | B8NQQ7 | Positive | 2028389 - 2030020 | 59709.7 |
| pectate lyase | H9N25_08280 | Not Available | Positive | 2030248 - 2033379 | 115615.0 |
| glycoside hydrolase family 140 protein | H9N25_08285 | Not Available | Positive | 2033381 - 2034781 | 53448.2 |
| doxx family membrane protein | H9N25_08290 | Not Available | Positive | 2035002 - 2035909 | 32885.6 |
| six-hairpin glycosidase | H9N25_08295 | Not Available | Positive | 2036005 - 2037837 | 68900.5 |
| sialate o-acetylesterase | H9N25_08300 | Q5RFU0 | Positive | 2038053 - 2039384 | 50341.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

