Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase n-terminal domain-containing protein | H9N25_08205 | Q8L7W8 | Positive | 2002156 - 2004972 | 104791.0 |
| duf4982 domain-containing protein | H9N25_08210 | T2KPJ7 | Positive | 2004976 - 2008593 | 136808.0 |
| doxx family membrane protein | H9N25_08215 | Not Available | Positive | 2008692 - 2010259 | 56683.8 |
| doxx family membrane protein | H9N25_08220 | B2GC11 | Positive | 2010317 - 2011248 | 33998.6 |
| arac family transcriptional regulator | H9N25_08225 | P96660 | Negative | 2011336 - 2012205 | 33686.0 |
| fucose isomerase | H9N25_08230 | Not Available | Positive | 2012429 - 2014063 | 61046.0 |
| duf3826 domain-containing protein | H9N25_08235 | Not Available | Positive | 2014074 - 2014742 | 25169.3 |
| tonb-dependent receptor | H9N25_08240 | T2KM18 | Positive | 2014780 - 2017917 | 116185.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_08245 | A7LXT5 | Positive | 2017944 - 2019779 | 68426.2 |
| hypothetical protein | H9N25_08250 | Not Available | Positive | 2019810 - 2020616 | 29619.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

