Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family phosphatase | H9N25_08155 | Q15JF8 | Negative | 1989460 - 1990131 | 25308.3 |
| galactose mutarotase | H9N25_08160 | Q66HG4 | Positive | 1990323 - 1991474 | 41659.2 |
| alpha-hydroxy-acid oxidizing protein | H9N25_08165 | A5UFG9 | Negative | 1991766 - 1992929 | 42941.2 |
| amidohydrolase family protein | H9N25_08170 | P55567 | Negative | 1993078 - 1993899 | 32207.4 |
| l-rhamnose mutarotase | H9N25_08175 | Q8P3K1 | Negative | 1993913 - 1994242 | 12746.3 |
| fumarylacetoacetate hydrolase family protein | H9N25_08180 | A9ALD1 | Negative | 1994244 - 1995098 | 30934.8 |
| sdr family oxidoreductase | H9N25_08185 | Q9WYG0 | Negative | 1995132 - 1995896 | 27033.4 |
| doxx family membrane protein | H9N25_08190 | Not Available | Positive | 1996164 - 1998898 | 102495.0 |
| glycoside hydrolase | H9N25_08195 | E8MGH9 | Positive | 1998898 - 2000451 | 60037.1 |
| glycoside hydrolase family 28 protein | H9N25_08200 | A7PZL3 | Positive | 2000568 - 2002154 | 58168.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

