Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c40 family peptidase | H9N25_08055 | P0AFV6 | Positive | 1967122 - 1967649 | 19696.8 |
| redoxin domain-containing protein | H9N25_08060 | O31687 | Positive | 1967804 - 1968271 | 18128.3 |
| thioredoxin family protein | H9N25_08065 | P44411 | Positive | 1968278 - 1968883 | 22002.5 |
| duf1624 domain-containing protein | H9N25_08070 | Not Available | Negative | 1968880 - 1970067 | 45173.0 |
| glycoside hydrolase family 125 protein | H9N25_08075 | Q10449 | Positive | 1970347 - 1971771 | 53315.6 |
| hypothetical protein | H9N25_08080 | Not Available | Positive | 1971968 - 1972162 | 7307.92 |
| nuclear transport factor 2 family protein | H9N25_08085 | Not Available | Negative | 1972163 - 1972516 | 13835.7 |
| tonb-dependent receptor | H9N25_08090 | A7FD14 | Negative | 1972622 - 1975000 | 88955.0 |
| leucine-rich repeat domain-containing protein | H9N25_08095 | Not Available | Negative | 1975241 - 1975999 | 28853.3 |
| hypothetical protein | H9N25_08100 | Not Available | Negative | 1976012 - 1976617 | 22480.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

