Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine o-acetyltransferase | H9N25_08005 | K4ICC9 | Negative | 1954333 - 1955391 | 39326.3 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | H9N25_08010 | P50125 | Negative | 1955420 - 1956751 | 47768.6 |
| hypothetical protein | H9N25_08015 | Not Available | Positive | 1957340 - 1958356 | 36812.6 |
| aminotransferase class v-fold plp-dependent enzyme | H9N25_08020 | P66876 | Negative | 1958546 - 1959661 | 40391.6 |
| hypothetical protein | H9N25_08025 | Not Available | Positive | 1959834 - 1960280 | 15966.1 |
| doxx family membrane protein | H9N25_08030 | Q8CJT5 | Positive | 1960692 - 1961884 | 43722.5 |
| histidine phosphatase family protein | H9N25_08035 | D3DFG8 | Positive | 1962003 - 1962626 | 23861.4 |
| menaquinone biosynthesis protein | H9N25_08040 | Q9L0T8 | Positive | 1962717 - 1963457 | 27787.2 |
| hpf/raia family ribosome-associated protein | H9N25_08045 | Not Available | Negative | 1963558 - 1963872 | 11651.9 |
| dna mismatch repair protein muts | H9N25_08050 | A6LG92 | Positive | 1964454 - 1967033 | 96770.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

