Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase | H9N25_07955 | Q47898 | Negative | 1944585 - 1945619 | 37263.9 |
| nitrilase family protein | H9N25_07960 | Q47679 | Negative | 1945695 - 1946498 | 31400.8 |
| methionine aminotransferase | H9N25_07965 | P77806 | Negative | 1946520 - 1947665 | 42831.8 |
| fad:protein fmn transferase | H9N25_07970 | Not Available | Positive | 1947945 - 1948361 | 15437.4 |
| duf2271 domain-containing protein | H9N25_07975 | A5F5Y3 | Positive | 1948315 - 1949478 | 42208.1 |
| pepsy-associated tm helix domain-containing protein | H9N25_07980 | Not Available | Positive | 1949594 - 1950133 | 20074.6 |
| multidrug effflux mfs transporter | H9N25_07985 | P28246 | Negative | 1950202 - 1951428 | 44139.1 |
| queuosine precursor transporter | H9N25_07990 | P44908 | Positive | 1951631 - 1952401 | 28867.1 |
| hypothetical protein | H9N25_07995 | Not Available | Positive | 1952430 - 1952879 | 17024.5 |
| homoserine dehydrogenase | H9N25_08000 | P19582 | Negative | 1952958 - 1954202 | 46432.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

