Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ser | Not Available | Not Available | Positive | 1936703 - 1936790 | Not Available |
| yihy/virulence factor brkb family protein | H9N25_07910 | O34437 | Negative | 1936886 - 1937875 | 37860.4 |
| acyl-coa thioesterase | H9N25_07915 | Q45061 | Negative | 1937888 - 1938292 | 15772.3 |
| endolytic transglycosylase mltg | H9N25_07920 | P44720 | Negative | 1938292 - 1939347 | 39938.3 |
| pasta domain-containing protein | H9N25_07925 | Q8XJL8 | Negative | 1939366 - 1940136 | 27951.9 |
| d-alanine--d-alanine ligase | H9N25_07930 | A6KXU3 | Positive | 1940337 - 1941323 | 36361.7 |
| crp/fnr family transcriptional regulator | H9N25_07935 | Q5SID7 | Positive | 1941465 - 1942046 | 22187.4 |
| duf983 domain-containing protein | H9N25_07940 | Not Available | Positive | 1942177 - 1942569 | 14738.2 |
| copper homeostasis protein cutc | H9N25_07945 | Q7NY61 | Negative | 1942880 - 1943638 | 27382.0 |
| duf2314 domain-containing protein | H9N25_07950 | Q9JRZ6 | Negative | 1943664 - 1944542 | 33158.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

