Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pectate lyase | H9N25_07805 | Q9C2Z0 | Positive | 1915237 - 1916628 | 49924.5 |
| glycosyltransferase family 4 protein | H9N25_07810 | Q0P9C9 | Positive | 1916710 - 1917861 | 43316.0 |
| phytanoyl-coa dioxygenase family protein | H9N25_07815 | P9WI90 | Positive | 1917914 - 1918717 | 31179.5 |
| doxx family membrane protein | H9N25_07820 | Not Available | Positive | 1918729 - 1919699 | 36642.3 |
| gnat family n-acetyltransferase | H9N25_07825 | P05332 | Positive | 1919696 - 1920190 | 19123.2 |
| doxx family membrane protein | H9N25_07830 | Not Available | Positive | 1920226 - 1921264 | 38280.8 |
| gnat family n-acetyltransferase | H9N25_07835 | Not Available | Positive | 1921295 - 1922353 | 40946.8 |
| polysaccharide biosynthesis protein | H9N25_07840 | P39853 | Positive | 1922385 - 1924313 | 73040.9 |
| hypothetical protein | H9N25_07845 | Not Available | Positive | 1924447 - 1924863 | 16221.2 |
| hypothetical protein | H9N25_07850 | Not Available | Positive | 1925013 - 1925570 | 20611.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

