Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 4 protein | H9N25_07755 | O05083 | Positive | 1904599 - 1905693 | 41325.5 |
| o-antigen ligase family protein | H9N25_07760 | Not Available | Positive | 1905690 - 1906601 | 34580.2 |
| hypothetical protein | H9N25_07765 | Not Available | Positive | 1906625 - 1906906 | 10719.6 |
| degt/dnrj/eryc1/strs family aminotransferase | H9N25_07770 | Q58466 | Positive | 1906964 - 1908238 | 47684.8 |
| sugar transferase | H9N25_07775 | Q48460 | Positive | 1908228 - 1908836 | 23863.6 |
| glycosyltransferase | H9N25_07780 | Q0P9C5 | Positive | 1908843 - 1909943 | 41753.1 |
| asparagine synthase (glutamine-hydrolyzing) | H9N25_07785 | P54420 | Positive | 1909964 - 1911805 | 70837.6 |
| hypothetical protein | H9N25_07790 | Q53WK1 | Positive | 1911812 - 1912708 | 34357.6 |
| glycosyltransferase | H9N25_07795 | Q58459 | Positive | 1912683 - 1913804 | 42244.4 |
| nad-dependent epimerase | H9N25_07800 | P39858 | Positive | 1913924 - 1915015 | 40683.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

