Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deor/glpr transcriptional regulator | H9N25_07705 | P0ACK4 | Positive | 1893188 - 1893952 | 27954.1 |
| response regulator transcription factor | H9N25_07710 | P37478 | Positive | 1893997 - 1894386 | 14765.7 |
| hypothetical protein | H9N25_07715 | Not Available | Negative | 1894453 - 1895130 | 24632.5 |
| polysaccharide biosynthesis/export family protein | H9N25_07720 | Q46629 | Positive | 1895850 - 1896608 | 28132.2 |
| polysaccharide biosynthesis tyrosine autokinase | H9N25_07725 | O52788 | Positive | 1896630 - 1898921 | 86176.9 |
| upxy family transcription antiterminator | H9N25_07730 | Q0TAL4 | Positive | 1899268 - 1899816 | 21227.7 |
| nucleotide sugar dehydrogenase | H9N25_07735 | Q04972 | Positive | 1899809 - 1901107 | 47587.4 |
| lipopolysaccharide biosynthesis protein | H9N25_07740 | P77377 | Positive | 1901112 - 1902554 | 54353.9 |
| degt/dnrj/eryc1/strs family aminotransferase | H9N25_07745 | Q6U1I3 | Positive | 1902551 - 1903708 | 43483.9 |
| glycosyltransferase | H9N25_07750 | P9WLV4 | Positive | 1903723 - 1904592 | 33997.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

