Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l20 | H9N25_07655 | B3ERW1 | Positive | 1880769 - 1881113 | 12995.0 |
| yegp family protein | H9N25_07660 | O69049 | Negative | 1881185 - 1881514 | 11841.5 |
| discoidin domain-containing protein | H9N25_07665 | Q02834 | Negative | 1881873 - 1883474 | 58003.2 |
| cbs domain-containing protein | H9N25_07670 | P50100 | Negative | 1884086 - 1885537 | 55233.7 |
| 3'-5' exonuclease | H9N25_07675 | Not Available | Negative | 1885527 - 1886204 | 26619.1 |
| insulinase family protein | H9N25_07680 | P55679 | Positive | 1886375 - 1887745 | 52381.2 |
| insulinase family protein | H9N25_07685 | Q4UML9 | Positive | 1887757 - 1889040 | 48033.5 |
| aquaporin family protein | H9N25_07690 | Q9X1E3 | Negative | 1889154 - 1889894 | 25687.8 |
| glycerol kinase glpk | H9N25_07695 | Q7P1G2 | Negative | 1889930 - 1891420 | 54297.0 |
| glycerol-3-phosphate dehydrogenase/oxidase | H9N25_07700 | Q9SS48 | Negative | 1891442 - 1893028 | 58261.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

