Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pd40 domain-containing protein | H9N25_07605 | A5D1A4 | Negative | 1866821 - 1870048 | 119067.0 |
| duf1016 domain-containing protein | H9N25_07610 | P45423 | Negative | 1870063 - 1871031 | 38027.9 |
| recq family atp-dependent dna helicase | H9N25_07615 | Q9CL21 | Positive | 1871146 - 1873038 | 71672.6 |
| mfs transporter | H9N25_07620 | P42306 | Positive | 1873168 - 1874475 | 48745.3 |
| (fe-s)-binding protein | H9N25_07625 | Q5L300 | Positive | 1874498 - 1875235 | 27335.6 |
| hypothetical protein | H9N25_07630 | Not Available | Positive | 1875594 - 1876490 | 32421.0 |
| acyltransferase | H9N25_07635 | P29113 | Positive | 1876634 - 1877716 | 41011.2 |
| doxx family membrane protein | H9N25_07640 | Q11UK3 | Positive | 1877955 - 1879879 | 70468.4 |
| translation initiation factor if-3 | H9N25_07645 | A6L9S3 | Positive | 1879896 - 1880465 | 21437.2 |
| 50s ribosomal protein l35 | H9N25_07650 | A6L9S4 | Positive | 1880495 - 1880695 | 7255.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

