Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction branch migration dna helicase ruvb | H9N25_07555 | A6H1G3 | Negative | 1856352 - 1857374 | 37573.1 |
| 3-hydroxybutyryl-coa dehydrogenase | H9N25_07560 | P45856 | Negative | 1857406 - 1858299 | 32046.1 |
| pyridoxamine 5'-phosphate oxidase | H9N25_07565 | Q72PF1 | Negative | 1858401 - 1859051 | 24834.4 |
| yqge/algh family protein | H9N25_07570 | Q11U74 | Positive | 1859098 - 1859661 | 21206.1 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | H9N25_07575 | Q9WYS7 | Negative | 1860024 - 1860536 | 17841.6 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | H9N25_07580 | O74197 | Negative | 1860605 - 1861744 | 42443.4 |
| nad(p)/fad-dependent oxidoreductase | H9N25_07585 | P37631 | Positive | 1861799 - 1862989 | 43711.6 |
| hypothetical protein | H9N25_07590 | Not Available | Negative | 1863123 - 1863839 | 27879.0 |
| radical sam protein | H9N25_07595 | O58549 | Positive | 1864040 - 1866241 | 83853.4 |
| hypothetical protein | H9N25_07600 | Not Available | Negative | 1866493 - 1866756 | 9933.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

