Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase 3 | H9N25_07505 | Q63GK5 | Negative | 1842428 - 1844281 | 69251.1 |
| hypothetical protein | H9N25_07510 | Not Available | Positive | 1844485 - 1844928 | 17124.0 |
| murein l,d-transpeptidase catalytic domain family protein | H9N25_07515 | Not Available | Negative | 1844925 - 1845710 | 28960.4 |
| duf3857 domain-containing transglutaminase family protein | H9N25_07520 | Not Available | Negative | 1846108 - 1848015 | 72379.1 |
| duf3857 domain-containing protein | H9N25_07525 | Not Available | Negative | 1848016 - 1849989 | 75472.1 |
| dna polymerase iii subunit epsilon | H9N25_07530 | Q8RA32 | Positive | 1850173 - 1851126 | 36236.3 |
| m1 family metallopeptidase | H9N25_07535 | Not Available | Positive | 1851284 - 1853143 | 70201.8 |
| trna epoxyqueuosine(34) reductase queg | H9N25_07540 | E6X4P3 | Negative | 1853306 - 1854241 | 35549.3 |
| hypothetical protein | H9N25_07545 | Not Available | Positive | 1854368 - 1854574 | 7448.98 |
| gnat family n-acetyltransferase | H9N25_07550 | P54608 | Negative | 1854636 - 1856144 | 57646.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

