Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_07455 | Not Available | Positive | 1834986 - 1835261 | 10505.6 |
| merr family transcriptional regulator | H9N25_07460 | Q50900 | Positive | 1835451 - 1836356 | 35100.4 |
| squalene/phytoene synthase family protein | H9N25_07465 | P54977 | Positive | 1836340 - 1837176 | 32429.6 |
| isopentenyl-diphosphate delta-isomerase | H9N25_07470 | Q5NWG5 | Positive | 1837177 - 1837719 | 20707.9 |
| ktsc domain-containing protein | H9N25_07475 | B2J384 | Negative | 1837999 - 1838205 | 8176.13 |
| hypothetical protein | H9N25_07480 | Not Available | Negative | 1838257 - 1838637 | 15258.8 |
| hypothetical protein | H9N25_07485 | Not Available | Positive | 1838750 - 1838938 | 6890.08 |
| aminotransferase class i and ii | H9N25_07490 | Not Available | Positive | 1839221 - 1840012 | 30022.8 |
| duf3037 domain-containing protein | H9N25_07495 | Not Available | Positive | 1839990 - 1840373 | 14537.7 |
| aaa family atpase | H9N25_07500 | Q57568 | Positive | 1840461 - 1842374 | 71745.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

