Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosylmethionine--8-amino-7-oxononanoate transaminase | H9N25_07405 | Q31SA6 | Positive | 1826540 - 1827841 | 48367.3 |
| srpbcc domain-containing protein | H9N25_07410 | O31806 | Negative | 1828019 - 1828450 | 16534.2 |
| helix-turn-helix transcriptional regulator | H9N25_07415 | O32242 | Negative | 1828453 - 1828770 | 12317.8 |
| mmcq/yjbr family dna-binding protein | H9N25_07420 | Not Available | Negative | 1828887 - 1829225 | 12736.2 |
| giy-yig nuclease family protein | H9N25_07425 | P9WLJ0 | Negative | 1829242 - 1830615 | 51692.0 |
| autotransporter outer membrane beta-barrel domain-containing protein | H9N25_07430 | Not Available | Negative | 1830743 - 1831369 | 22439.4 |
| response regulator | H9N25_07435 | P23620 | Negative | 1831380 - 1831742 | 14108.1 |
| response regulator | H9N25_07440 | Q9KU36 | Negative | 1831861 - 1832619 | 28431.5 |
| sensor histidine kinase | H9N25_07445 | Q2FK46 | Negative | 1832781 - 1833689 | 35255.8 |
| response regulator transcription factor | H9N25_07450 | P70955 | Negative | 1833956 - 1834696 | 28418.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

