Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | H9N25_07355 | O31711 | Positive | 1817871 - 1818629 | 27539.1 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | H9N25_07360 | O34899 | Positive | 1818694 - 1819242 | 20793.2 |
| duf2795 domain-containing protein | H9N25_07365 | Not Available | Positive | 1819328 - 1819549 | 8601.69 |
| lmo0937 family membrane protein | H9N25_07370 | Not Available | Positive | 1819711 - 1819869 | 5511.31 |
| doxx family membrane protein | H9N25_07375 | B6YQA2 | Negative | 1820241 - 1820905 | 24937.0 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | H9N25_07380 | A6GW82 | Negative | 1820965 - 1822014 | 39850.0 |
| abc transporter permease | H9N25_07385 | Q5F6V6 | Positive | 1822215 - 1823459 | 45989.9 |
| pyridoxal phosphate-dependent aminotransferase | H9N25_07390 | Q8KDS8 | Negative | 1823798 - 1824994 | 43723.1 |
| cation transporter | H9N25_07395 | P74068 | Positive | 1825109 - 1826095 | 36880.1 |
| nudix domain-containing protein | H9N25_07400 | Not Available | Positive | 1826082 - 1826534 | 17410.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

