Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glpgli family protein | H9N25_07305 | Not Available | Negative | 1808683 - 1809444 | 29240.6 |
| outer membrane beta-barrel protein | H9N25_07310 | Not Available | Negative | 1809451 - 1812228 | 102666.0 |
| dinb family protein | H9N25_07315 | Not Available | Negative | 1812457 - 1812933 | 18353.9 |
| hypothetical protein | H9N25_07320 | Not Available | Negative | 1812956 - 1813498 | 20646.6 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | H9N25_07325 | A6L9D4 | Negative | 1813753 - 1814508 | 28142.9 |
| hypothetical protein | H9N25_07330 | Not Available | Negative | 1814510 - 1814710 | 7714.6 |
| deoxynucleoside kinase | H9N25_07335 | P37529 | Negative | 1814725 - 1815339 | 23709.2 |
| tryptophan--trna ligase | H9N25_07340 | Q7MT94 | Negative | 1815444 - 1816442 | 37467.8 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | H9N25_07345 | Q9LLY4 | Positive | 1816708 - 1817433 | 28269.5 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatc | H9N25_07350 | Q11R87 | Positive | 1817436 - 1817726 | 11020.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

