Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maoc family dehydratase | H9N25_07255 | Q7U2S5 | Negative | 1790586 - 1791044 | 17470.1 |
| tonb-dependent receptor | H9N25_07260 | P17315 | Positive | 1791545 - 1794001 | 90832.1 |
| paai family thioesterase | H9N25_07265 | Q9NPJ3 | Positive | 1794476 - 1794916 | 16270.8 |
| hypothetical protein | H9N25_07270 | Not Available | Positive | 1795080 - 1795268 | 7265.66 |
| tonb-dependent receptor | H9N25_07275 | T2KPJ3 | Positive | 1795446 - 1798616 | 116318.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_07280 | T2KPM5 | Positive | 1798634 - 1800091 | 53720.9 |
| spore maturation protein | H9N25_07285 | P35157 | Negative | 1800351 - 1801622 | 45345.9 |
| s9 family peptidase | H9N25_07290 | B2RIT0 | Negative | 1801901 - 1804759 | 107300.0 |
| membrane protein insertase yidc | H9N25_07295 | A6L9D2 | Negative | 1805078 - 1806883 | 68208.0 |
| ctp synthase | H9N25_07300 | Q11S24 | Negative | 1806904 - 1808520 | 60038.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

