Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | H9N25_07205 | A3N0H9 | Negative | 1781051 - 1782016 | 36641.0 |
| doxx family membrane protein | H9N25_07210 | T2KPJ7 | Positive | 1782407 - 1784237 | 68707.6 |
| sdr family oxidoreductase | H9N25_07215 | O34896 | Positive | 1784258 - 1785082 | 28989.1 |
| mannonate dehydratase | H9N25_07220 | Q0I586 | Positive | 1785132 - 1786301 | 43771.2 |
| hypothetical protein | H9N25_07225 | Not Available | Positive | 1786566 - 1786799 | 8977.37 |
| Trna-arg | Not Available | Not Available | Positive | 1787029 - 1787102 | Not Available |
| duf1826 domain-containing protein | H9N25_07235 | Not Available | Positive | 1787243 - 1787941 | 26259.2 |
| duf92 domain-containing protein | H9N25_07240 | Q58343 | Positive | 1788022 - 1788738 | 25218.3 |
| hypothetical protein | H9N25_07245 | Not Available | Positive | 1788857 - 1789243 | 14026.9 |
| phosphonatase-like hydrolase | H9N25_07250 | Q38V12 | Negative | 1789549 - 1790220 | 24300.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

