Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 1c | H9N25_07155 | P76577 | Negative | 1764136 - 1766508 | 88731.7 |
| doxx family membrane protein | H9N25_07160 | Not Available | Negative | 1766578 - 1772168 | 202656.0 |
| nuclear transport factor 2 family protein | H9N25_07165 | Not Available | Positive | 1772380 - 1772802 | 15512.1 |
| hypothetical protein | H9N25_07170 | Not Available | Negative | 1772857 - 1773261 | 15070.3 |
| type i dna topoisomerase | H9N25_07175 | Q9PEV8 | Negative | 1773347 - 1775908 | 96231.1 |
| glutathione peroxidase | H9N25_07180 | O32770 | Positive | 1776526 - 1777038 | 19259.3 |
| aquaporin z | H9N25_07185 | Q8EHC1 | Negative | 1777111 - 1777818 | 23915.8 |
| mbl fold metallo-hydrolase | H9N25_07190 | C0SP91 | Negative | 1778163 - 1778999 | 31131.0 |
| marr family transcriptional regulator | H9N25_07195 | P9WMF0 | Negative | 1779046 - 1779489 | 16913.6 |
| mfs transporter | H9N25_07200 | Q2FW71 | Positive | 1779660 - 1780889 | 44912.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

