Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_07055 | Not Available | Negative | 1744184 - 1744381 | 7129.57 |
| duf3606 domain-containing protein | H9N25_07060 | Not Available | Negative | 1744386 - 1744610 | 8737.41 |
| duf2029 domain-containing protein | H9N25_07065 | Not Available | Positive | 1744902 - 1746113 | 46331.9 |
| duf3606 domain-containing protein | H9N25_07070 | Not Available | Positive | 1746221 - 1746394 | 6453.51 |
| dna ligase d | H9N25_07075 | Q9I1X7 | Positive | 1746405 - 1749101 | 102511.0 |
| dabb family protein | H9N25_07080 | I6WU39 | Positive | 1749149 - 1749445 | 11481.8 |
| hypothetical protein | H9N25_07085 | Not Available | Positive | 1749780 - 1749977 | 7445.11 |
| tonb-dependent receptor | H9N25_07090 | Q9HUX3 | Negative | 1750128 - 1752539 | 87331.0 |
| hypothetical protein | H9N25_07095 | A5A2P0 | Positive | 1752846 - 1753991 | 42607.2 |
| l-glyceraldehyde 3-phosphate reductase | H9N25_07100 | Q46851 | Negative | 1754208 - 1755200 | 36900.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

