Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_07005 | Not Available | Negative | 1731438 - 1732391 | 35563.9 |
| membrane dipeptidase | H9N25_07010 | Not Available | Positive | 1732784 - 1734202 | 53211.4 |
| hypothetical protein | H9N25_07015 | Not Available | Positive | 1734237 - 1735205 | 36634.5 |
| hypothetical protein | H9N25_07020 | Not Available | Positive | 1735202 - 1735453 | 9408.36 |
| hypothetical protein | H9N25_07025 | Not Available | Positive | 1735450 - 1735953 | 19302.2 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_07030 | Q8G2M7 | Positive | 1736530 - 1737612 | 40114.2 |
| efflux rnd transporter permease subunit | H9N25_07035 | Q8FWV9 | Positive | 1737637 - 1740807 | 115375.0 |
| tolc family protein | H9N25_07040 | O31101 | Positive | 1740800 - 1742233 | 52710.0 |
| voc family protein | H9N25_07045 | Q49VY9 | Positive | 1742585 - 1742980 | 14821.5 |
| doxx family membrane protein | H9N25_07050 | Q6GDZ1 | Positive | 1743047 - 1744182 | 42103.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

