Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_06955 | Not Available | Negative | 1722319 - 1723011 | 24082.5 |
| duf11 domain-containing protein | H9N25_06960 | Not Available | Negative | 1723032 - 1725230 | 75862.9 |
| hypothetical protein | H9N25_06965 | Not Available | Negative | 1725286 - 1725948 | 23368.9 |
| gnat family n-acetyltransferase | H9N25_06970 | O31513 | Negative | 1726647 - 1727153 | 19752.5 |
| fmn-binding negative transcriptional regulator | H9N25_06975 | P21341 | Negative | 1727164 - 1727769 | 23231.5 |
| dmt family transporter | H9N25_06980 | P96668 | Negative | 1727800 - 1728690 | 31568.1 |
| plp-dependent aminotransferase family protein | H9N25_06985 | P39389 | Positive | 1728783 - 1730195 | 52349.2 |
| hypothetical protein | H9N25_06990 | Not Available | Negative | 1730221 - 1730358 | 5027.82 |
| hypothetical protein | H9N25_06995 | Not Available | Negative | 1730527 - 1730724 | 7647.37 |
| hypothetical protein | H9N25_07000 | Not Available | Negative | 1730732 - 1731454 | 27490.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

