Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase | H9N25_06805 | P73599 | Positive | 1686518 - 1687381 | 31781.8 |
| gfo/idh/moca family oxidoreductase | H9N25_06810 | Q8ECL7 | Positive | 1687381 - 1688493 | 41232.0 |
| hypothetical protein | H9N25_06815 | Not Available | Negative | 1688688 - 1688990 | 11055.5 |
| hsp20/alpha crystallin family protein | H9N25_06820 | Q4UJB1 | Negative | 1689034 - 1689510 | 17924.0 |
| ferritin-like domain-containing protein | H9N25_06825 | P21362 | Negative | 1689828 - 1690373 | 19619.2 |
| hypothetical protein | H9N25_06830 | Not Available | Negative | 1690401 - 1690634 | 8781.71 |
| tonb-dependent receptor | H9N25_06835 | Q05098 | Positive | 1690674 - 1693139 | 91783.1 |
| hypothetical protein | H9N25_06840 | Not Available | Positive | 1693792 - 1694646 | 30573.8 |
| abc transporter atp-binding protein | H9N25_06845 | P42332 | Positive | 1694685 - 1695656 | 35431.0 |
| abc transporter permease | H9N25_06850 | Q9HYK9 | Positive | 1695727 - 1696656 | 34392.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

