Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-pro | Not Available | Not Available | Positive | 1675971 - 1676044 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 1676098 - 1676171 | Not Available |
| arac family transcriptional regulator | H9N25_06765 | P28816 | Positive | 1676427 - 1677350 | 35243.5 |
| crp/fnr family transcriptional regulator | H9N25_06770 | A5F890 | Positive | 1677966 - 1678568 | 23135.2 |
| sterol desaturase family protein | H9N25_06775 | Q9EQS5 | Positive | 1678659 - 1679423 | 30207.4 |
| hypothetical protein | H9N25_06780 | Not Available | Positive | 1679981 - 1680304 | 11699.5 |
| hypothetical protein | H9N25_06785 | Not Available | Positive | 1680450 - 1680788 | 12482.7 |
| helix-turn-helix transcriptional regulator | H9N25_06790 | P96660 | Negative | 1680991 - 1681860 | 33619.1 |
| thua domain-containing protein | H9N25_06795 | Q8RMH6 | Positive | 1682026 - 1684944 | 107844.0 |
| mfs transporter | H9N25_06800 | Q8NLB7 | Positive | 1684971 - 1686515 | 55977.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

