Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_06655 | Not Available | Negative | 1629824 - 1630009 | 6343.21 |
| hypothetical protein | H9N25_06660 | Not Available | Positive | 1630761 - 1631546 | 26863.4 |
| duf11 domain-containing protein | H9N25_06665 | Not Available | Positive | 1631687 - 1646878 | 500012.0 |
| tandem-95 repeat protein | H9N25_06670 | Not Available | Positive | 1646941 - 1655178 | 275612.0 |
| type ix secretion system membrane protein porp/sprf | H9N25_06675 | Not Available | Positive | 1655237 - 1656208 | 35649.6 |
| ompa family protein | H9N25_06680 | P37726 | Positive | 1656253 - 1658214 | 73176.0 |
| dna polymerase iv | H9N25_06685 | Q3ABL2 | Positive | 1658511 - 1659824 | 49413.3 |
| dna polymerase iii subunit alpha | H9N25_06690 | O83675 | Positive | 1659827 - 1662844 | 116349.0 |
| hypothetical protein | H9N25_06695 | Not Available | Positive | 1662856 - 1663431 | 22133.0 |
| duf1905 domain-containing protein | H9N25_06700 | Not Available | Positive | 1663710 - 1664219 | 19387.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

