Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna starvation/stationary phase protection protein | H9N25_06605 | P45173 | Positive | 1618664 - 1619143 | 18369.0 |
| ubid family decarboxylase | H9N25_06610 | Q9PKV2 | Positive | 1619248 - 1621083 | 67670.3 |
| hypothetical protein | H9N25_06615 | Not Available | Negative | 1621185 - 1622714 | 55456.7 |
| hypothetical protein | H9N25_06620 | Not Available | Negative | 1622735 - 1623733 | 35895.4 |
| proline--trna ligase | H9N25_06625 | A6GZF3 | Positive | 1623932 - 1625404 | 55813.7 |
| doxx family membrane protein | H9N25_06630 | P24601 | Positive | 1625597 - 1626735 | 41286.2 |
| tigr02757 family protein | H9N25_06635 | Not Available | Positive | 1626943 - 1627794 | 33267.8 |
| crp/fnr family transcriptional regulator | H9N25_06640 | Not Available | Positive | 1627915 - 1628529 | 23993.1 |
| type ix secretion system membrane protein porp/sprf | H9N25_06645 | Not Available | Positive | 1628675 - 1629016 | 13006.5 |
| response regulator transcription factor | H9N25_06650 | P66798 | Positive | 1629148 - 1629795 | 23739.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

