Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | H9N25_06555 | Q3T0Q0 | Negative | 1608603 - 1609070 | 17944.4 |
| yggs family pyridoxal phosphate-dependent enzyme | H9N25_06560 | O66631 | Negative | 1609072 - 1609773 | 26392.9 |
| duf4296 domain-containing protein | H9N25_06565 | Not Available | Positive | 1609843 - 1610400 | 20777.0 |
| endonuclease muts2 | H9N25_06570 | B0S1P2 | Positive | 1610402 - 1612780 | 89641.8 |
| pqq-dependent sugar dehydrogenase | H9N25_06575 | P73001 | Positive | 1613034 - 1614122 | 39535.0 |
| coa transferase subunit a | H9N25_06580 | P42315 | Positive | 1614420 - 1615121 | 25413.6 |
| duf4260 domain-containing protein | H9N25_06585 | Not Available | Positive | 1615121 - 1615477 | 13345.8 |
| coa transferase subunit b | H9N25_06590 | P63651 | Positive | 1615477 - 1616139 | 23588.2 |
| uridine kinase | H9N25_06595 | A0Q140 | Negative | 1616217 - 1616867 | 24886.7 |
| lysm peptidoglycan-binding domain-containing protein | H9N25_06600 | O07532 | Negative | 1616864 - 1618378 | 55436.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

