Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_06505 | Not Available | Negative | 1601575 - 1601781 | 7257.75 |
| hypothetical protein | H9N25_06510 | Not Available | Negative | 1601922 - 1602143 | 7724.17 |
| hypothetical protein | H9N25_06515 | Not Available | Negative | 1602277 - 1602495 | 7654.01 |
| hypothetical protein | H9N25_06520 | Not Available | Negative | 1602643 - 1602861 | 7625.06 |
| sigma-70 family rna polymerase sigma factor | H9N25_06525 | Not Available | Positive | 1603063 - 1603629 | 21801.0 |
| trypsin-like peptidase domain-containing protein | H9N25_06530 | P55377 | Positive | 1603636 - 1604733 | 40345.2 |
| doxx family membrane protein | H9N25_06535 | O77834 | Positive | 1604897 - 1605531 | 22777.4 |
| cold-shock protein | H9N25_06540 | O30875 | Positive | 1605738 - 1605935 | 7315.77 |
| doxx family membrane protein | H9N25_06545 | Not Available | Negative | 1606079 - 1607265 | 42918.1 |
| aspartate kinase | H9N25_06550 | Q57991 | Negative | 1607339 - 1608601 | 47626.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

