Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3606 domain-containing protein | H9N25_06455 | Not Available | Negative | 1590969 - 1591169 | 7610.32 |
| cold-shock protein | H9N25_06460 | Not Available | Positive | 1591473 - 1591679 | 7735.29 |
| pas domain s-box protein | H9N25_06465 | Q45614 | Negative | 1591705 - 1593558 | 70038.9 |
| ubix family flavin prenyltransferase | H9N25_06470 | O58742 | Positive | 1594163 - 1594735 | 21117.5 |
| hypothetical protein | H9N25_06475 | Not Available | Positive | 1594780 - 1595331 | 21523.8 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | H9N25_06480 | P54462 | Positive | 1595548 - 1596870 | 49747.8 |
| prolipoprotein diacylglyceryl transferase | H9N25_06485 | Q49VV9 | Positive | 1597306 - 1598457 | 42875.0 |
| inositol monophosphatase | H9N25_06490 | B4ED80 | Positive | 1598510 - 1599298 | 29778.9 |
| nifu family protein | H9N25_06495 | Q9UMS0 | Negative | 1599474 - 1600025 | 20156.8 |
| adenylosuccinate lyase | H9N25_06500 | Q54J34 | Negative | 1600113 - 1601459 | 50519.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

