Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose--hexose-1-phosphate uridylyltransferase | H9N25_06405 | P31764 | Positive | 1578010 - 1579071 | 40849.3 |
| galactokinase | H9N25_06410 | Q8R8R7 | Positive | 1579084 - 1580235 | 42526.0 |
| sodium/sugar symporter | H9N25_06415 | P96169 | Positive | 1580274 - 1581950 | 60557.5 |
| na+/h+ antiporter | H9N25_06420 | A8FHE3 | Negative | 1582196 - 1583446 | 45401.4 |
| rna-binding protein | H9N25_06425 | O35698 | Negative | 1583635 - 1583973 | 12478.4 |
| 9-o-acetylesterase | H9N25_06430 | P70665 | Positive | 1584159 - 1586144 | 73233.4 |
| nuclear transport factor 2 family protein | H9N25_06435 | Not Available | Positive | 1586256 - 1586648 | 14907.3 |
| glycoside hydrolase family 127 protein | H9N25_06440 | P05656 | Positive | 1587007 - 1589517 | 93184.5 |
| ompa family protein | H9N25_06445 | P28612 | Positive | 1589592 - 1590455 | 31809.8 |
| doxx family membrane protein | H9N25_06450 | Not Available | Positive | 1590577 - 1590888 | 12044.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

