Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2264 domain-containing protein | H9N25_06355 | Not Available | Positive | 1560938 - 1562185 | 47493.2 |
| family 43 glycosylhydrolase | H9N25_06360 | Not Available | Positive | 1562265 - 1563383 | 41958.9 |
| beta-galactosidase | H9N25_06365 | P48982 | Positive | 1563495 - 1565330 | 69043.9 |
| susc/raga family tonb-linked outer membrane protein | H9N25_06370 | T2KPJ3 | Positive | 1565602 - 1568667 | 113206.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_06375 | T2KN63 | Positive | 1568672 - 1570375 | 63434.9 |
| tonb-dependent receptor | H9N25_06380 | T2KM18 | Positive | 1570551 - 1573499 | 109440.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_06385 | T2KN63 | Positive | 1573512 - 1575257 | 64586.2 |
| glycoside hydrolase family 16 protein | H9N25_06390 | P45798 | Positive | 1575373 - 1576230 | 32896.3 |
| ompa family protein | H9N25_06395 | P13794 | Negative | 1576370 - 1576900 | 19419.2 |
| nudix hydrolase | H9N25_06400 | Q58549 | Negative | 1577151 - 1577849 | 26747.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

