Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_06305 | Not Available | Positive | 1547858 - 1548352 | 18897.4 |
| transposase | H9N25_06310 | Not Available | Positive | 1548569 - 1549123 | 21479.8 |
| hypothetical protein | H9N25_06315 | Not Available | Positive | 1549257 - 1549694 | 16920.2 |
| hypothetical protein | H9N25_06320 | Not Available | Positive | 1549679 - 1549891 | 8275.43 |
| doxx family membrane protein | H9N25_06325 | Not Available | Positive | 1549894 - 1550441 | 20187.4 |
| hypothetical protein | H9N25_06330 | Not Available | Positive | 1551199 - 1551735 | 20014.7 |
| response regulator | H9N25_06335 | T2KMF4 | Positive | 1552143 - 1556138 | 152768.0 |
| doxx family membrane protein | H9N25_06340 | Not Available | Positive | 1556281 - 1557605 | 48294.0 |
| doxx family membrane protein | H9N25_06345 | A0A3R0A696 | Positive | 1557621 - 1559791 | 82010.1 |
| glycoside hydrolase family 88 protein | H9N25_06350 | L7P9J4 | Positive | 1559791 - 1560924 | 43999.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

