Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoglycoside phosphotransferase family protein | H9N25_06255 | E8MF12 | Positive | 1536992 - 1538083 | 41894.1 |
| gtra family protein | H9N25_06260 | Not Available | Negative | 1538278 - 1538748 | 17504.4 |
| cdp-alcohol phosphatidyltransferase family protein | H9N25_06265 | Not Available | Negative | 1538745 - 1539434 | 26240.7 |
| phytanoyl-coa dioxygenase family protein | H9N25_06270 | Not Available | Negative | 1539592 - 1540398 | 30496.6 |
| sdr family oxidoreductase | H9N25_06275 | P54554 | Negative | 1541929 - 1542717 | 28737.3 |
| tonb-dependent receptor | H9N25_06280 | Q9Z3Q5 | Positive | 1542879 - 1545230 | 85822.8 |
| pepsy domain-containing protein | H9N25_06285 | Not Available | Positive | 1545276 - 1546322 | 39834.3 |
| srpbcc domain-containing protein | H9N25_06290 | Not Available | Negative | 1546329 - 1546745 | 15704.6 |
| selt/selw/selh family protein | H9N25_06295 | Not Available | Positive | 1547187 - 1547468 | 10719.3 |
| hypothetical protein | H9N25_06300 | Not Available | Positive | 1547498 - 1547647 | 5736.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

