Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyd family efflux transporter periplasmic adaptor subunit | H9N25_06205 | Not Available | Positive | 1517586 - 1518512 | 33507.3 |
| efflux rnd transporter permease subunit | H9N25_06210 | Q48815 | Positive | 1518515 - 1521559 | 111163.0 |
| ynce family protein | H9N25_06215 | Not Available | Positive | 1521613 - 1522620 | 36014.2 |
| formylglycine-generating enzyme family protein | H9N25_06220 | D1A7C3 | Positive | 1523027 - 1524184 | 42710.6 |
| doxx family membrane protein | H9N25_06225 | T2KPJ3 | Positive | 1524477 - 1527496 | 108022.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_06230 | T2KN63 | Positive | 1527512 - 1528987 | 54700.4 |
| arylsulfatase | H9N25_06235 | P51691 | Positive | 1529013 - 1530668 | 61114.5 |
| arylsulfatase | H9N25_06240 | P51691 | Positive | 1530686 - 1532335 | 61558.0 |
| beta-galactosidase | H9N25_06245 | P48982 | Positive | 1533070 - 1535397 | 87844.1 |
| gfo/idh/moca family oxidoreductase | H9N25_06250 | B2FLK4 | Positive | 1535524 - 1536876 | 49979.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

