Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_06155 | Not Available | Positive | 1508494 - 1508987 | 19366.2 |
| doxx family membrane protein | H9N25_06160 | P44135 | Negative | 1509250 - 1511185 | 70897.3 |
| hypothetical protein | H9N25_06165 | Not Available | Negative | 1511356 - 1512063 | 24897.8 |
| hd domain-containing protein | H9N25_06170 | Not Available | Positive | 1512351 - 1512704 | 13158.8 |
| hypothetical protein | H9N25_06175 | Not Available | Positive | 1512743 - 1512943 | 8179.85 |
| response regulator transcription factor | H9N25_06180 | P0A4H7 | Positive | 1513013 - 1513690 | 25162.5 |
| hamp domain-containing histidine kinase | H9N25_06185 | Q49ZT9 | Positive | 1513687 - 1514940 | 47717.8 |
| pepsy-like domain-containing protein | H9N25_06190 | Not Available | Positive | 1515122 - 1515529 | 14552.9 |
| phosphatase pap2 family protein | H9N25_06195 | B2RLI7 | Positive | 1515532 - 1516323 | 28863.5 |
| tolc family protein | H9N25_06200 | Not Available | Positive | 1516336 - 1517583 | 47260.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

