Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | H9N25_06105 | Q5HLG3 | Negative | 1494081 - 1494704 | 24029.9 |
| cpbp family intramembrane metalloprotease | H9N25_06110 | Not Available | Positive | 1495407 - 1496198 | 29878.8 |
| helix-turn-helix transcriptional regulator | H9N25_06115 | Not Available | Positive | 1497134 - 1497385 | 9950.17 |
| ipt/tig domain-containing protein | H9N25_06120 | Not Available | Positive | 1498088 - 1503850 | 196116.0 |
| t9ss type a sorting domain-containing protein | H9N25_06125 | Not Available | Positive | 1503817 - 1504887 | 37352.1 |
| hypothetical protein | H9N25_06130 | P20533 | Positive | 1504884 - 1505570 | 24814.1 |
| doxx family membrane protein | H9N25_06135 | Q51872 | Positive | 1505907 - 1506354 | 17323.1 |
| voc family protein | H9N25_06140 | O31535 | Positive | 1506403 - 1506837 | 16152.4 |
| duf1569 domain-containing protein | H9N25_06145 | Not Available | Positive | 1506821 - 1507270 | 17349.9 |
| helix-turn-helix domain-containing protein | H9N25_06150 | A0A0H2ZIC3 | Negative | 1507332 - 1508312 | 37148.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

