Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | H9N25_06055 | Q9KU36 | Negative | 1473561 - 1473959 | 15413.7 |
| doxx family membrane protein | H9N25_06060 | Not Available | Positive | 1474417 - 1478306 | 140266.0 |
| response regulator | H9N25_06065 | T2KMF4 | Positive | 1478505 - 1482629 | 156958.0 |
| tonb-dependent receptor | H9N25_06070 | T2KM18 | Positive | 1482859 - 1486044 | 115901.0 |
| doxx family membrane protein | H9N25_06075 | Not Available | Positive | 1486050 - 1487752 | 61858.5 |
| xylanase | H9N25_06080 | G2Q1N4 | Positive | 1487775 - 1489298 | 57140.7 |
| beta-galactosidase | H9N25_06085 | P48982 | Positive | 1489454 - 1491271 | 68343.5 |
| Trna-lys | Not Available | Not Available | Positive | 1491792 - 1491864 | Not Available |
| beta-lactamase family protein | H9N25_06095 | Q99RJ0 | Positive | 1492210 - 1493298 | 40129.4 |
| response regulator transcription factor | H9N25_06100 | Q82Z76 | Negative | 1493383 - 1494081 | 26889.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

