Pedobacter riviphilus SW-16

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter riviphilus SW-16 is a species of bacteria characterized by the presence of flagella, which suggests that it is motile and capable of moving through its environment. This motility can be advantageous for locating nutrients or evading unfavorable conditions. Genomically, it is notable for having a single replicon, indicating a streamlined genetic structure that can facilitate efficient replication and maintenance of its genetic material. The genomic information for Pedobacter riviphilus SW-16 is accessible via the accession number CP061171.1, providing a resource for researchers interested in its genetic makeup and potential applications. The traits of this bacterium align it with other members of the Pedobacter genus, which are often found in diverse ecological niches, including soil and aquatic environments. In terms of ecological insight, the motility conferred by flagella may enable Pedobacter riviphilus SW-16 to thrive in dynamic environments, where the ability to move towards more favorable conditions can be crucial for survival. This adaptability could allow it to play a role in nutrient cycling and the breakdown of organic matter within its habitat, thereby contributing to ecosystem health and stability. Understanding the characteristics of Pedobacter riviphilus SW-16 may help illuminate its ecological roles and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter riviphilus
StrainSW-16

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter riviphilus SW-16, Complete Genome

Gene Summary

Adenine Count

1802189 bp

Thymine Count

1779389 bp

Guanine Count

1131489 bp

Cytosine Count

1112294 bp

Genome Length

5825361 bp

Protein-coding Genes

4781 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m1 family metallopeptidaseH9N25_06005Q9EQH2Positive1458687 - 146036363922.2
dihydrodipicolinate synthase family proteinH9N25_06010B1YJ39Positive1460701 - 146161833357.6
aldehyde dehydrogenase (nadp(+))H9N25_06015Q08IC0Positive1461633 - 146321956202.4
4-hydroxyproline epimeraseH9N25_06020D2QN44Positive1463212 - 146421336632.0
fad-dependent oxidoreductaseH9N25_06025A3KEZ1Positive1464254 - 146549545368.5
helix-turn-helix transcriptional regulatorH9N25_06030C6DJR4Positive1465785 - 146668733765.4
duf885 family proteinH9N25_06035Not AvailablePositive1466774 - 146855268749.8
amino acid permeaseH9N25_06040Q9QXA6Positive1468595 - 147004352235.1
dpp iv n-terminal domain-containing proteinH9N25_06045Q6F3I7Positive1470120 - 147241486569.6
nipsnap family proteinH9N25_06050Not AvailablePositive1472589 - 147337430345.7

Displaying genes 1201 – 1210 of 4847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.