Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m1 family metallopeptidase | H9N25_06005 | Q9EQH2 | Positive | 1458687 - 1460363 | 63922.2 |
| dihydrodipicolinate synthase family protein | H9N25_06010 | B1YJ39 | Positive | 1460701 - 1461618 | 33357.6 |
| aldehyde dehydrogenase (nadp(+)) | H9N25_06015 | Q08IC0 | Positive | 1461633 - 1463219 | 56202.4 |
| 4-hydroxyproline epimerase | H9N25_06020 | D2QN44 | Positive | 1463212 - 1464213 | 36632.0 |
| fad-dependent oxidoreductase | H9N25_06025 | A3KEZ1 | Positive | 1464254 - 1465495 | 45368.5 |
| helix-turn-helix transcriptional regulator | H9N25_06030 | C6DJR4 | Positive | 1465785 - 1466687 | 33765.4 |
| duf885 family protein | H9N25_06035 | Not Available | Positive | 1466774 - 1468552 | 68749.8 |
| amino acid permease | H9N25_06040 | Q9QXA6 | Positive | 1468595 - 1470043 | 52235.1 |
| dpp iv n-terminal domain-containing protein | H9N25_06045 | Q6F3I7 | Positive | 1470120 - 1472414 | 86569.6 |
| nipsnap family protein | H9N25_06050 | Not Available | Positive | 1472589 - 1473374 | 30345.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

