Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr domain-containing protein | H9N25_05955 | Not Available | Positive | 1439490 - 1440434 | 35106.4 |
| tonb-dependent receptor | H9N25_05960 | T2KPJ3 | Positive | 1440655 - 1443906 | 117972.0 |
| doxx family membrane protein | H9N25_05965 | T2KPM5 | Positive | 1443918 - 1445440 | 55554.4 |
| alkaline phosphatase | H9N25_05970 | P19406 | Positive | 1445584 - 1447296 | 62966.0 |
| response regulator | H9N25_05975 | Q8EDD7 | Positive | 1447533 - 1447913 | 14563.5 |
| hypothetical protein | H9N25_05980 | Not Available | Positive | 1447923 - 1448390 | 17967.9 |
| aminopeptidase p family protein | H9N25_05985 | Q54G06 | Positive | 1448540 - 1450315 | 65485.8 |
| hypothetical protein | H9N25_05990 | Not Available | Positive | 1450723 - 1453488 | 103161.0 |
| glycoside hydrolase family 127 protein | H9N25_05995 | E8MGH8 | Negative | 1454068 - 1456434 | 89469.2 |
| doxx family membrane protein | H9N25_06000 | Not Available | Positive | 1456683 - 1458079 | 50701.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

