Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter riviphilus SW-16
Accession NumberCP061171.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | H9N25_00555 | O07582 | + | 116545 - 117138 | 23036.0 |
| fecr domain-containing protein | H9N25_00560 | Not Available | + | 117225 - 118244 | 39081.1 |
| carboxypeptidase-like regulatory domain-containing protein | H9N25_00565 | T2KPJ3 | + | 118282 - 118995 | 25983.0 |
| susc/raga family tonb-linked outer membrane protein | H9N25_00570 | T2KMI3 | + | 118908 - 121874 | 108834.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_00575 | T2KN63 | + | 121886 - 123283 | 51995.7 |
| tlpa family protein disulfide reductase | H9N25_00580 | Q65HX8 | + | 123351 - 125351 | 74677.0 |
| alpha/beta hydrolase | H9N25_00585 | Q9WYH1 | + | 125351 - 126436 | 39780.9 |
| gnat family n-acetyltransferase | H9N25_00590 | O31443 | - | 126678 - 127187 | 20054.2 |
| crp/fnr family transcriptional regulator | H9N25_00595 | Not Available | - | 127432 - 127992 | 21525.0 |
| hypothetical protein | H9N25_00600 | Not Available | + | 128106 - 128438 | 12350.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.