Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family protein | H9N25_05905 | Not Available | Negative | 1429709 - 1430104 | 14608.5 |
| putative sulfate exporter family transporter | H9N25_05910 | Q7ULI3 | Positive | 1430420 - 1431790 | 48931.8 |
| sugar phosphate isomerase/epimerase | H9N25_05915 | Q9WYP7 | Positive | 1432039 - 1432926 | 32597.6 |
| hypothetical protein | H9N25_05920 | Not Available | Negative | 1432960 - 1433586 | 23448.4 |
| hypothetical protein | H9N25_05925 | Not Available | Positive | 1433904 - 1434347 | 17896.6 |
| hypothetical protein | H9N25_05930 | Not Available | Negative | 1434596 - 1434808 | 8027.7 |
| histidine kinase | H9N25_05935 | Q8EQQ2 | Negative | 1434990 - 1435736 | 28517.5 |
| response regulator transcription factor | H9N25_05940 | Q8ZBV2 | Negative | 1436368 - 1437093 | 27715.5 |
| llm class flavin-dependent oxidoreductase | H9N25_05945 | O32254 | Positive | 1437546 - 1438550 | 36463.4 |
| rna polymerase sigma-70 factor | H9N25_05950 | Q45585 | Positive | 1438863 - 1439426 | 20889.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

