Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family protein | H9N25_05855 | T2KN63 | Positive | 1420357 - 1422084 | 64694.7 |
| duf2236 domain-containing protein | H9N25_05860 | Not Available | Negative | 1422133 - 1422891 | 29107.9 |
| hypothetical protein | H9N25_05865 | Not Available | Negative | 1422885 - 1423382 | 18660.7 |
| lrp/asnc family transcriptional regulator | H9N25_05870 | P37424 | Positive | 1423941 - 1424408 | 17847.8 |
| organic hydroperoxide resistance protein | H9N25_05875 | P0A0V4 | Negative | 1424481 - 1424939 | 15836.9 |
| alpha/beta hydrolase | H9N25_05880 | P95276 | Negative | 1424986 - 1426035 | 38441.7 |
| histidine kinase | H9N25_05885 | Q6GK52 | Positive | 1426508 - 1427527 | 38871.9 |
| response regulator transcription factor | H9N25_05890 | P94514 | Positive | 1427508 - 1428269 | 29321.6 |
| duf1223 domain-containing protein | H9N25_05895 | Not Available | Positive | 1428481 - 1429263 | 28434.0 |
| hypothetical protein | H9N25_05900 | Not Available | Positive | 1429278 - 1429451 | 6401.77 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

