Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_05805 | Not Available | Negative | 1403631 - 1404239 | 22694.0 |
| duf2807 domain-containing protein | H9N25_05810 | Not Available | Negative | 1404372 - 1404986 | 22667.7 |
| adenylate/guanylate cyclase domain-containing protein | H9N25_05815 | Q52915 | Positive | 1405344 - 1406372 | 38507.5 |
| fasciclin domain-containing protein | H9N25_05820 | Not Available | Positive | 1406800 - 1409025 | 82013.3 |
| doxx family membrane protein | H9N25_05825 | T2KPJ3 | Positive | 1409032 - 1412307 | 120438.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_05830 | T2KPM5 | Positive | 1412318 - 1413781 | 55253.9 |
| fasciclin domain-containing protein | H9N25_05835 | Q8CFM6 | Positive | 1413792 - 1415606 | 66198.3 |
| fasciclin domain-containing protein | H9N25_05840 | Not Available | Positive | 1415639 - 1416247 | 22362.0 |
| hypothetical protein | H9N25_05845 | Not Available | Positive | 1416133 - 1417071 | 35596.4 |
| susc/raga family tonb-linked outer membrane protein | H9N25_05850 | T2KPJ3 | Positive | 1417100 - 1420333 | 118340.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

