Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | H9N25_05755 | P26993 | Negative | 1389360 - 1390172 | 31856.6 |
| sdr family oxidoreductase | H9N25_05760 | O31680 | Negative | 1390207 - 1390935 | 25529.0 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_05765 | P35320 | Negative | 1390932 - 1391957 | 37061.1 |
| rna polymerase sigma-70 factor | H9N25_05770 | Q45585 | Positive | 1392980 - 1393561 | 22799.8 |
| duf4974 domain-containing protein | H9N25_05775 | Not Available | Positive | 1393649 - 1394788 | 42119.7 |
| tonb-dependent receptor | H9N25_05780 | T2KM18 | Positive | 1395079 - 1398426 | 123902.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_05785 | T2KPM5 | Positive | 1398445 - 1400211 | 66104.2 |
| duf3823 domain-containing protein | H9N25_05790 | Not Available | Positive | 1400236 - 1400931 | 25614.6 |
| abc-f family atp-binding cassette domain-containing protein | H9N25_05795 | O05519 | Positive | 1401324 - 1402958 | 62025.6 |
| hypothetical protein | H9N25_05800 | Not Available | Positive | 1403168 - 1403479 | 11989.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

