Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | H9N25_05655 | O07567 | Positive | 1369908 - 1370906 | 36901.9 |
| hypothetical protein | H9N25_05660 | Not Available | Negative | 1371248 - 1371904 | 25471.7 |
| sigma-70 family rna polymerase sigma factor | H9N25_05665 | O05409 | Positive | 1372396 - 1372950 | 21572.9 |
| fecr domain-containing protein | H9N25_05670 | Not Available | Positive | 1373015 - 1373830 | 30256.6 |
| duf4974 domain-containing protein | H9N25_05675 | Not Available | Positive | 1373869 - 1374072 | 7697.22 |
| susc/raga family tonb-linked outer membrane protein | H9N25_05680 | T2KPJ3 | Positive | 1374138 - 1377146 | 111575.0 |
| hypothetical protein | H9N25_05685 | Not Available | Positive | 1377155 - 1377346 | 7058.59 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_05690 | T2KPM5 | Positive | 1377441 - 1379201 | 66635.2 |
| metallophosphoesterase | H9N25_05695 | Q7T0Q0 | Positive | 1379207 - 1380217 | 37688.4 |
| ricin domain-containing protein | H9N25_05700 | Q47899 | Positive | 1380267 - 1381547 | 46693.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

