Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | H9N25_05605 | Q5RCF8 | Positive | 1354842 - 1355630 | 28427.9 |
| smp-30/gluconolactonase/lre family protein | H9N25_05610 | Q9TTJ6 | Positive | 1355693 - 1356568 | 31712.6 |
| sodium:solute symporter family protein | H9N25_05615 | P96169 | Positive | 1356628 - 1358280 | 60317.0 |
| hypothetical protein | H9N25_05620 | Not Available | Negative | 1358403 - 1358741 | 12790.5 |
| doxx family membrane protein | H9N25_05625 | Not Available | Negative | 1359614 - 1361121 | 53478.6 |
| susc/raga family tonb-linked outer membrane protein | H9N25_05630 | Q8A1G1 | Negative | 1361139 - 1364099 | 105099.0 |
| hypothetical protein | H9N25_05635 | D9TT10 | Negative | 1364321 - 1365256 | 34214.1 |
| fructofuranosidase/invertase | H9N25_05640 | Q84JL5 | Negative | 1365258 - 1366442 | 44443.5 |
| mfs transporter | H9N25_05645 | A2X6E6 | Negative | 1366446 - 1367789 | 48741.0 |
| alpha-glucosidase | H9N25_05650 | P29094 | Negative | 1367805 - 1369580 | 68862.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

