Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_05555 | O27802 | Positive | 1340774 - 1341264 | 17532.4 |
| class 1 fructose-bisphosphatase | H9N25_05560 | A4SM33 | Positive | 1341284 - 1342363 | 39376.3 |
| ribonuclease hi | H9N25_05565 | B7JVG1 | Negative | 1342360 - 1342827 | 17733.3 |
| Trna-his | Not Available | Not Available | Positive | 1343003 - 1343079 | Not Available |
| helix-turn-helix transcriptional regulator | H9N25_05575 | P96660 | Negative | 1343636 - 1344502 | 33425.5 |
| tonb-dependent receptor | H9N25_05580 | T2KM18 | Positive | 1344678 - 1347746 | 110672.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_05585 | T2KN63 | Positive | 1347752 - 1349434 | 62557.6 |
| rraa family protein | H9N25_05590 | G2IQQ8 | Positive | 1349695 - 1350399 | 25955.6 |
| doxx family membrane protein | H9N25_05595 | Q56307 | Positive | 1350538 - 1353425 | 103000.0 |
| mandelate racemase/muconate lactonizing enzyme family protein | H9N25_05600 | D4GP40 | Positive | 1353623 - 1354789 | 43453.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

